Welll, first off, welcome... secondly, get ready for a lot of opinions.... Thirdly, do your research and take a look at what information is available so you get an idea of what you are getting into.....
A few places to start reading:
www.fordcummins.com
www.destroked.com
www.dieselconversion.com (the new fordcummins.com website)
Now you want to decide what transmission you're going to use, as that isn't overly complicated, but plays into what all you'll need in parts.....
You'll start with motor mounts, of course, then go to a rear transmission mount to keep it all straight. Then a new radiator and intercooler (optional, but I suggest it if you want to pull a trailer much and for just general intake temp reduction). Driveshafts, transfer cases, wiring.... Since you're going to use a 12v, that makes it pretty easy, wiring wise...
I've done several of the late 80's and early '90's Fords.... two of which I still have and drive occasionally.... (I really have wayyyy too many trucks, if there is such a thing.....) For my own preference, I use the NV trannies and NP transfer cases. I can pick up a ZF transmission with one hand and load it. Not so much with an NV4500. The New Process T-case that came with the truck may fit it, depending on what it is.... Being a gas engine, it most likely has the smaller input shaft, but there are several they use....