Does this TSB apply to you? I had the this problem on my 99, it's a quick fix.
09-04-99 All Hard-to-diagnose noise coming from the engine turbocharger area.
This bulletin applies to vehicles equipped with a Cummins 5. 9L – 24V diesel engine built prior to engine serial number (ESN) 56587424. The ESN is located on the engine data plate which is located on the front left side of the engine, affixed to the gear housing.
A noise may be present which on initial investigation may sound like a noisy turbocharger bearing. The sound of the noise may be described as a whistle, a squeal, a howl, a moan, or a gurgle. The noise will be more noticeable as engine temperature increases. The noise will most often occur when the warm engine is operated between 1,500 and 2,200 rpm’s. The noise is usually heard in the cab, louder on the passenger side or seems to come form the dash vents. The noise may be caused by the coolant supply hose connector. The connector is located on the cylinder head next to the turbocharger. The connector is used to supply coolant to the heater hose. The bulletin describes the replacement of the hose connector