I don't know if there is any difference on early HPCR engines but my feeble memory tells me that there was a slight difference in compression ratio between my previous '01 HO six speed truck and the SO automatics in '01 and '02.
Do the heads have the same part number in the casting?
JT- Which machine shop are you going with this time?
The SO heads didn't have the high-heat valves or pressed in seats, if I recall correctly.