Adding ATF is the oldest trick in the book to try justify red fuel in <em>on road</em> vehicles.
<blockquote><em>"Honest Mr Highway Patrol, the red coloring is from using ATF, I always buy road tax fuel. "</em></blockquote>
A number of diesel fuel additives on the market are highly rated for cleaning injectors. I really like the Cummins labeled cleaner best of all the products I've tried, but cannot justify the cost. Meaner Power Kleaner by Howes works very well, too.
Forgot to add:
Good point on the filter fill Russell. NEVER fill the filter with fuel. Any amount of dirt will harm the injector pump. Better to use the primer button or let the electric lift pump prime the system.
-John