Hey guys.
FYI, it took me about 40 hours to complete this swap, with no special tools or lift. However, I did have to get the tires 19" off the ground for the bellhousing to clear the chassis (due to the type of trans mount I have on my jack).
DMcPherson..... no, there are no layout lines to cut the floor. I measured, cut, measured, cut some more, tried to fit the trans, cut some more... ... I started small, so I wouldn't have too much of a large hole, then stupid me forgets to remove the gear selector from the trans (4 bolts would have saved a lot of time and aggrivation). As far as the pedals and clutch master cylinder... the pedal bracket is the same, as well as the pedal shaft. However, there are spacers, different pedals (of course) and the clutch switch. There are dimples in the firewall right where the clutch master cylinder needs to mount.
As I mentioned before, most everything about the swap is straight forward. With that said, I'm glad I have a shop manual, I needed to change the input shaft on the transfer case to have the same spline and shaft diameter as the NV5600. This was straight forward as well.
Most of the work was done by me alone. I had a friend of mine help with the heavy stuff. Other than that, it wasn't too bad.
Remember, the NV5600 weighs about 400 lbs, the flywheel weighs about 60 lbs. Oh yeah, the flywheel, make sure you use new bolts to mount the flywheel (per the manual), and don't over-torque the pressure plate mounting bolts either.
HTH
George