Please, if you're going to spend some $$$ on injectors, get some upgrades... it really is worth the money. If you go that route you can keep your stock ones, have them cleaned and reset and put away for future need. BTW, have the pop off pressure raised to about 255 or 260 bar tool. (stock they are 245 I believe)
The problem(s) you describe can be injector related but indirectly in my opinion... if you have some bad injectors that are, say, sticking, then you have in effect retarted your timing due to the delay in opening. That coupled with the poor injection quality/cloud will cause coarse fuel to enter a cylinder that is basically cold to begin with.
That is why the KSB is used. It not only increases the injection pressure but it also forces the timing into "advance" setting by changing the relationship between cam and roller ring start point.
The symptoms you describe don't really seem like injector problems on the surface though... the fact that the conditions and symptoms are affected so noticably eg:20 min/5 min. kind of thing. .
My first thought's would be to confirm/re-confirm the function on your KSB;grid heater relays;grid heater elements.
Next would be the timing issue... your situation really seems to rest in this general area...
While there can be some variance here... normally the slots in the inj. pump flange will only allow so much advance.
I'd guess that about 17-18* advance is attainable using the pump rotation method, couple that with roughly 5* advance provided by the KSB/mechanical piston advance and you are at an approx max timing of 22'ish degrees.
That is a fair bit, but not enough to cause the problems you are having... . at least I don't think so. . hmmmmmm... bob, do you agree or no???
Once you've checked the items above then I'd run a major dose of fuel additive. Aim for something with good detergent content and high cetane improver.
That will serve two functions... one, obviously, to clean out the system from the pump right through to the injectors... sometimes even the delivery valves can get contaminated by crappy fuel.
Secondly the cetane improver is going to eliminate poor fuel grade cetane value and improve the burn quality of the fuel so that you'll be able to rule out the incomplete burn symptom... . that can cause some of the smoke and issue's you are having in my opinion.
Are we correct in assuming your lift pump is ok???
It should provide about 8psi at idle and no less than 3psi at WOT (that's according to "the book")
pb...