this is one of those situations where its more important to be consistent and repeatable than it is to choose a particular collection method. That said I have to say Nick's method probably lends itself the best to repeatability! to interpret the numbers themselves, it would be important to understand if the collected oil is post filter or pre-filter, and what that might mean in terms of the concentration of contaminants on each side of the filter, and (if the sample is post filter) the filtration efficiency and performance of the element.
Since in my experiments it is important to drop the oil at the same time as the sample, I used the drained oil method at oil change time. I first clean the oil pan well, especially around the drain plug, always ending with a new shop towel wetted with new oil. I back out the plug some and clean again. When I finally drop the plug, I let the oil drain for a few seconds before collecting the sample from the stream. the sample should come from the middle, not the end or the begnining of the drain.