Vehicles today have J1850 (PCI) this signal permeates through 90% or more of the vehicle components and devices
So what? He is taking an 06 long block and putting it in an 04, NONE of the electronics are on a long block. Do you really think you have to buy all the electronics to get a reman???
As stated before you can switch all the electronics over, but you will have to use the '04 injectors too. The parameters for firing and the physical tip design are different.
You CANNOT use the 04 injectors on an 04. 5+ engine. The injectors don't care if there are 2 or 5 events, its all in the ECU in the form of events and duration. There are no differences in injector bodies from 03-07. 5, only the tips. Do you really think you get year specific reman injectors when you buy them???
The pistons are a different part number as well, but I don't know how different they are. I can tell you from experience that if you use the 04. 5 up injectors with the 03/04 computer it will run like crap, smoke like a train, and get really hot.
Not true, as long as the correct injector tip for the piston bowl is used the injector doesn't care and neither does the computer. The pre 04. 5 injectors have 8 smaller holes, the 04. 5+ injectors have 5 larger holes. The amount of fuel injected is purely a function of the software. If what you say is true you could never put in larger injectors, never change the hole count or size, etc, etc. The only thing that happens is you get more advance on the 04. 5 injectors because they will flow mor fuel, marginal advance.
Once again, the OP is putting an 06 engine in an 04 truck, he is not transplanting. All the electronics from the 04, MAP, FCA, ECU, etc, etc, will transfer to the 06 long block.