Hi dcava,
When I needed a new exhaust system a few years back, I also wanted 4" tubes. I ended up with a Flowmaster model 17309 3-1/2" setup. less back pressure is always good on a diesel. However, there comes a point of diminishing return, and unless you are running over a certain horsepower say in the 225HP and up range, you probably do not require the bigger tubes. When I noticed that the stock downpipe on my truck was smaller than 4" I decided against the work and $ that would have been involved with fitting that size exhaust.
Would a 4" exhaust be better than the out of the box Flowmaster kit on my truck? Yes, especially if you replace the stock downpipe with a larger diameter one. Is it worth it? You make the call.
Tom