Yes - it is actually recommended that the brakes be bled with the engine off, which simply provides a "manual mode" of operations - no harm is done to the brake booster using this method. The components inside the brake booster simply "stack up internally" to provide a full manual brake actuation. You will find that the brake pedal height will be about 2 inches lower when the engine isn't running, or without the lines connected, as compared to a "powered up" pedal height. If brake bleeding is performed before the booster pressure lines are connected, some minor power steering fluid discharge may occur from the ports, which is completely normal. Since the hydraulic brake assist units provide a full manual mode of brake operations when powered down, the lack of a firm brake pedal during brake bleeding procedures clearly indicates that air is still trapped in the lines, and / or possibly an indicator of ailing brake components elsewhere in the vehicles braking system requiring service. If the vehicle is equipped with rear drum brakes, or integral emergency brake type calipers, please insure that these components are in a proper state of adjustment, as this will greatly impact brake pedal height and operations in service.