The stock filter on the 3rd gen's has been proven to flow and filter better than any stock replacement, and at filter vs flow its better than any of the CAI's I have seen. Not to mention its pretty good at sucking in cold air, with the 3 mods listed below I see 6-12* above ambient in the intake maniflod. Bone stock I saw 10-15* above ambient. . those are cruise temps. I don't see how hot enigne bay air wouldn't make it's way into the BHAF and increase the air temps.
1) A Home Depot CAI will bring more ambient air into the stock box when boosting hard, this will redice the IAT's and reduce the restriction allowing more, smoother flow.
2) A Airaid MIT will remove the intake baffles from the tube between the filter and the turbo. This mod direct air into the lower elbow and promotes smooth airflow. This will increase low boost throttle responce, and increase turbo spool. It also makes the turbo a little louder, but still passes the wife test. The best part about the MIT on your 06 is that it leaves the OEM lower elbow in place. The lower elbow has directional vanes that smooth the air as it makes the final 90* turn into the turbo. Holset claims this makes the turbo up to 30% more efficient. There is no aftermarket CAI I know of that does this, right off the bat you have lost performance there with a CAI. This is a low-mid range rpm mod.
3) The OEM intake horn is very restricive. It was built with ease of assembly in mind, not performance. A GDP Horn is the best bang for the buck on the intake horns, and it will hold a MK2+ filter kit if you want one. But the intake horn will decrease low end smoke (if you run a tuner), increase throttle responce, and increase turbo spool. I also saw 2-3* lower IAT's with the horn than pre-horn. This is a low-mid range rpm mod.
As for air filters, the OEM is the best on the market now. Be sure it has the OEM 4" pleat version.
As for the sensor it reads intake air temp and ambient pressure. The pressure is used to determine boost, and will be about the same in the inlet tube or in the enigne bay. The temp is the only way the ECM see's ambient temp, and thats colder than what's in the intake tube, so you may not get the fast idle when it otherwise would occur.