Generally it is called "Barking the Turbo"
The engineering term is "Compressor surge or stall". It can occur occasionally with a stock CTD if the conditions are just right. Generally just letting of the throttle smoothly or not completely releasing it while speed shifting will eliminate the conditions that cause Barking. In real simple terms the compressor has more air / boost pressure than the engine will accept and the air flow "Backs up". This is compounded by letting up on the throttle or shifting to a higher gear and/or slowing down the rpm reducing the air flow thru the engine. It is even more common with high performance turbo chargers with larger compressor wheels.
The noise is caused by reversal of the airflow through the compressor. Quickly backing of the throttle or the "Kwik" reduction in engine rpm causes the turbine side wheel of the turbocharger to loose drive energy. The Compressor wheel then slows down. With the impeller decelerating, since it is dynamic rather than a positive displacement air compressor, it cannot maintain the head (high boost pressure) seen in the air intake, Intercooler and the turbo's compressor outlet and the air flow reverses through the compressor of the turbocharger. (Note: The turbo charger's wheels
DO NOT Reverse rotation. ) The reversal of the airflow unloads the compressor impeller, shaft and turbine. Once the excess head has been dumped, the compressor pressurizes the intake system again, but if the turbocharger is still decelerating, its speed can fall to a point where it cannot maintain the head it has created, the flow reversal will occur again. This process can repeat itself over and over if the conditions are right. Each time this occurs you will hear a "Whoomp" or "Whoosh" or "Thump".
The repeated loading and unloading of the compressor wheel, Shaft and Turbine wheels can cause cyclic fatigue failures. This is not a good thing for most turbo chargers although their is at least one that will stand up to it.
Kurt.
Note: Much of the above terminology is borrowed from a post I read long ago from someone identified as "Rusty". It was the best explanation I had seen to date.