Kurt is right about the exisitence of two 6spds. They are the same trans in every aspect except for the input shaft. The early (99-00) has the same size input shaft as the 5spd trans, and the later style has a bigger diameter input. So if you get the early, you can keep your original flywheel and use a 5spd clutch. With the later style you have to get the HO flywheel and the starter spacer block and the HO style clutch.
-If you are mounting it in a 98 or older truck, you either have to get the 99 and newer transmission crossmember or simply redrill the mounting holes in your original because the transmission mount sits about 6" further back.
-You have to shorten the rear drive shaft and lengthen the front driveshaft.
-You have to get a longer transfercase shift rod.
-If it's going in a 97 or older truck you'll have to figure out how to drive the speedometer gear, becasue the 6spd doesn't have a place for speedometer gears to go in. the 98 and up trucks read the electronic sensor off the rear axle.
Or you can rebuild the 5spd with the fully splined mainshaft from Standard Transmission and have a better 'bullet proof' trans and be done.
-Mike