Are you using a high silicate coolant? If so, it could be the silicate (which is there to protect aluminum components, which we don't have) plating out. The silicate gunk can clog cooling passages in the radiator, heater core and even the engine. That's why Cummins calls for a low silicate ethylene glycol (green) coolant for the parent bore (no wet liners) B-series engine.
Rusty