I strongly recommend the 2-volume series by Charles Fayette Taylor: "The Interal Combustion Engine in Theory and Practice". Available at Amazon, but they're a little pricey. Outstanding reciprocating engine physics. They were written back in the 60s, so there's no modern electronics info, though. But we all know physics never changes.
His bibliography is very extensive, and leads to many landmark papers published on all sorts of topics. I particularly value the NACA reports for combustion dynamics... and they're available for free!