It is still kind of hard to tell but I can give you my best guess

I do know the hill, been through there many times.
I suspect you generated some heat in the trans climbing the hill, pulling the trailer. The trip down wasn't long enough to fully cool the trans. The trans had most likely shifted down to third, if you were in T/H mode and touched the brakes, it almost certainly was.
So now you get to the bottom and your foot is off the throttle, yet the rpms are high. When you toe back into the throttle it is going to take a fair amount of travel to get the fuelling to catch up with the higher rpms. You would have to pretty much floor it to get acceleration. That hesitation seems to me like it is pretty normal. Also keep in mind that the throttle isn't connected mechanically to anything, it is all electronic now. That might help account for the weird feel.
I think the trans holding the lower gear is a self preservation feature to get it cooled fully from the long pull with the trailer. If in T/H it will also tend to hold the lower gears longer. You were probably also still on a steeper grade than it seemed. The trans may have been holding third gear as designed to help slow the truck.
My bet is that there is nothing wrong, just an adjustment to how the new truck works. I have found that even the auto equipped trucks benefit from driver involvement, especially when towing in the mountains.
My suggestion is to keep track of whether or not you have it in T/H. Use the T/H OD off features to control what gear you are in, shift manually down to second gear if the speeds are low enough to help ease the burden on the brakes. I found that with active participation the auto trucks work very well for towing. I would HIGHLY reccomend an exhaust brake if you plan to tow in the mountains regularly. Once you have tried one, you will be dumbfounded as to how you got along without it. I had one on my '06 Mega (auto) and loved it. They are better yet with a manual trans but that isn't the truck you have. Give it some serious consideration.