hikethemtns,
not sure I agree with your test setup. I would use a clamp-on ammeter around a battery ground and start disconnecting.
The clamp-on ammeters are not good for detecting parasitic drain. The draw you are looking for is usually very small. It's more accurate to disconnect the positive battery cable and connect a DMM in-line between the battery positive post and the positive battery cable (bridging the the connection) set the DMM to DC A. Disconnect the ground on the other battery that's in parallel.
Make certain all lights, accessories, and ignition are off. Close all the doors and make sure all courtesy lights are off. Wait 10 minutes for all the computers and circuits to power down (they actively watch for a while, you will see them drop off on the DMM) You should see:
Normal 10-30mA (0. 02 to 0. 03A)
Max= 50mA (0. 05A)
Anything higher than 50mA is going to tax your battery.
If you have a high parasitic drain, pull each fuse, one by one, watching the meter, until the draw goes away. DO NOT REPLACE A FUSE AFTER IT'S REMOVAL- this will cause computers to "wake up" rendering your test inconclusive.
As mentioned, be sure to verify that health of your batteries. 12. 6V is a fully charged battery (2. 1V per cell x 6). If your batteries are in question, isolate them and load test them for 15 seconds w/ a carbon pile load @ 1/2 the CCA rating. If they drop below 9. 6V, they are not strong enough for service. Check electrolyte levels (if equipped) and try to recharge them separately. Make sure there is no corrosion on the cables, posts, and connectors. Also... keep the tops of your batteries clean. They WILL self discharge across the dirt and moisture resting on their tops.
Good Luck.