You are really trying to fix something that isn't broken. With the way the new trucks run today you would have to be crazy to to delete one in my opinion. There just isn't any up side to it on a 13+.
I'm not sure on this. I know Ram and other manufacturers have found ways to decrease problems with the emissions systems present on the current diesel's, but to my knowledge they haven't really done anything to drastically change how the emissions system's work over the early, more problematic versions (they seemed to have tweaked them a little, mostly with programming). And more importantly, we are still lacking the same scope of long-term reliability data for the 2007.5+ 6.7L Cummins that we have for the older 5.9L.
The DPF, at least how Ram uses it, is still relying on late-cycle fuel injection (into the cylinder) to perform the active DPF regeneration. If you go watch the videos and read the articles about this process, you will understand that this causes some amount of fuel contamination in the engine oil. How much contamination and whether it will cause problems for the engine is still under discussion, but do note that many diesel repair shops recommend avoiding Ram's 15k oil change interval and instead advocate changing every 7,500, or sooner, to mitigate this issue.
The EGR is still putting exhaust gases back into the engine. As I understand it, the newer engines have better EGR cooling than previous versions, but the process still puts gunk and soot back into the engine and the internals.
The DEF seems to be the least intrusive of all the systems, and really functions similar to a traditional Catalytic converter in that it's relying on a chemical reaction to convert harmful exhaust into more benign elements. Still it's a complex system relying on additional sensors which can go bad over time and can have issues if the wrong type of DEF is used.
I'm sure the reliability on these systems has been improved from where it was back in 2007 or 2008. But the question still stands: how long will these systems run until they require a full replacement or repair (which will be very costly)? And, more importantly, how long will the engine run with these systems in place? The older diesels could regularly hit 400-500k with proper maintenance. Will these newer engines, on average, have the same lifespans?
I understand the harmful nature of the emissions produced by diesels (NOX and particulate matter), and I understand that the new emissions systems are very effective at curbing those emissions. But if you're mpg is suffering 2-3 mpg, and if you're replacing and/or repairing these emissions-laden engines more often relative to the older engines, how much benefit is the environment really seeing? The materials used in the DPF are very expensive minerals and require a significant expenditure in resources to harvest. It's an issue I'm torn on and I don't see an easy answer. These 2013+ trucks may work just fine for the first 150k or so. But after that, and when the warranty expires, how reliable will they be?