Your window not going back up is more then likely caused by broken wire(s) INSIDE the black rubber loom between the B pillar and rear door. Peel back the rubber and unplug the harness connector from the b pillar, then roll back the rubber even more toward the door and you will expose the wires. One or several of them may be completely and obviously broken through, however you also MUST palpate/feel along the length of EACH wire that is NOT obviously broken in order to feel if their is a hard/brittle section on any of the unbroken wire. The hard section of wire is either already broken UNDERNEATH the wire insulation or about to break…either way you will want to cut, splice, solder and shrink tube any of the broken wires, as well as the wire sections that do not look broken but ARE brittle/hard under the insulation.
In short, what is happeinginng is that the repeated open/closign of the door is causing metal fatigue of the cheap wire that Chrysler used to make the harness. Unfortunately, it will continue to happen even after the fix unless you use sections of ultra fine strand radio control wire of the proper replacement gauge for your splices, or even rebuild the entire harness using ultra fine strand wire. If you have ever bent a coat hangar or even baling wire back and forth rapidly in order to try and break it, you will know what i mean about the hard/brittle section that forms on each side of the bend.