Boy this is a great debate. . I have a 2004. 5 4x4 with the auto. . 3 months ago, I test drove both and liked how much quicker the auto felt from a stand still, so I ordered mine with the auto.
Then last week I was towing 4 horses (about 11K loaded with trailer) and hated the auto's strange habits such as absolutely no engine braking, and mushy Torque converter feel. Going down a long grade in 3rd, once the engine gets below 1800, it completely disengages and you have no engine braking. My Allison is superior to the Dodge trans in my opinion.
So I went back to dodge, test drove a 6 speed thinking I would love it, but man, what a pain in the tail to drive!. First is too low, so I tried starting in 2nd, but the throws are way too long, notchy, and a ***** to find 5th and not get hung up on 3rd. Then I notice, that 6th is . 74 to 1 whereas the auto is . 69 to 1, meaning at 60 miles per hour, the stick is about 250 rpm's higher than the auto. Plus you have this goofy pan on the floor for the drink holder, and you lose all the trans tunnel foot space for the center seat.
so, I cancelled my 05 order, and now an getting Inglewood Trans and Suncosast to do a converter swap, change the valve body and adjust the TQ lock up. Once that's done, I hope to eliminate the loose converter, the ill timed TQ lock up and release, and other quirks. if that doesn't work, I'm going to figure out how to adapt an Allison to the Cummins, patent it, and retire when all of you guys buy my adaptor kit.