This is only my opinion but I think the only place to take your pyro readings is PRE-TURBO.
If you use post-turbo then you actually need to do math to get close to your temps readings... . add 10*F for every 1 pound of boost ... until you get up around 22-25 psi, then that is too low and you should be adding more per pound of boost. Way too much work... . been there done that...
As for the AFC/starwheel/cone etc. When you go to remove the diaphram you will need to gently tug up and down on it a bit to make the fueling pin inside, pop back into its hole, out of the way so the diaphram/cone can be removed.
Once its out, remove the spring too. You should look closely at the cone on the bottom of the AFC shaft. You will likely see a shiny "witness mark" were the fueling pin has been riding up and down. This will tell you if your diaphram has been running at/on/near max or min. Look down into the hole the cone came out of. You'll see, down near the bottom a little hole on the left side, towards the front of the engine. That is were the fueling pin comes out of. If you cycle the thottle lever now, that pin should/will pop out. If it does then it is working ok, and you can use a small flat blade screwdriver to push it back in.
See the starwheel?? turning clockwise will ease pressure on the spring/diaphram and allow fueling to happen with less boost... turning counter clockwise increases the pressure on the spring/diaphram and make the pump wait for more boost before lowering the AFC/cone and starting the fueling. This can affect your EGT's alot depending on how far you turn it.
The 'full fuel screw' is on the back of the pump as you describe. It has a 13mm locknut. Use a spring loaded center punch to mark the little 6mm slotted screw end. That way you'll know were you started... loosen the locknut (13mm deep socket) and turn the fuel screw clockwise (top toward engine) to increase overall fueling, and counter clockwise to decrease. Tighten locknut.
Remember this adjustment sends fuel to the full power band,,,, BUT, a larger portion of that increase is directed towards the lower/mid range than the upper end. This will affect EGT's and mileage a fair bit. Oh ya, and smoke too !!!
Here's a link to a picture I drew one night when I had way too much time on my hands.
http://216.235.147.117/forums/showthread.php?threadid=19239
Hope that helps a bit...
Bob.