DJ,
Possible ideas:
Harder pedal. During most clutch replacements (based on part # for part # replacement) the effort required to push the pedal goes down, this can be explained. For it to go up on a Dodge release system I would look at the release bearing first, not the rotating element the sliding element. The bearing must slide freely on the front bearing retainer. If the grease groove in the bearing was installed dry and was not packed with grease then a higher pedal effort is possible. The fork can be installed "flipped" push rod end to ball stud end. I checked our TSB and the only note we have on this involves noise issues. Hard pedal on the Dodge is not a common complaint, again assuming part # to part # replacement. Also, the OE hydraulic system is self adjusting, much like disc brakes do not have an adjustment.
The pedal stroke range on the Dodge does not have freeplay, period.
The stroke starts creating pressure immediately, releases the clutch (shift) and has some reserve travel at the bottom of the stroke. This is typical. If your clutch engages immediately off of the floor, it could be a hydraulic problem or a clutch problem. I look at the pedal stroke in sections, initial take up, release range and then reserve travel. On engagement, it gives up the reserve travel then enters the friction zone (initial engagement and control) then fully engaged.
Harsh or abrupt engagement could be caused by several sources, not likely to improve with driving.
Flywheels. I know the service manual statement and it has some confusion in it. Resurfacing the Cummins F/W has been a topic of discussion. I think some of the confusion comes from the manual addressing F/W's made by 2 different mfgr's Dodge and Cummins, I think each has their own recipe. Used Cummins F/W's can have hot spots in them that a lathe tool bit will just skip over and not remove, that's why grinding is used to resurface. But grinding may not remove the below the surface hot spot zone.
Good luck.