Broken bolt wasn't crossed, probably just overtightened or bent at some point. It will move fairly easily. Dowel alignment pins were not too terrible, but one was left in the transmission, and transmission housing showed some signs it wasn't aligned when it was started together... . New adapter plate had two new dowels, which appeared to extend beyond any damage in the transmission casing. When pressed together by hand, there was no give, and they didn't want to let go. Bolts weren't rounded, casing didn't show any signs of movement except right around the broken bolt, so it went back together this morning with a new South Bend, new rear main, new front input shaft bearing and seal, and a thoroughly cleaned and washed G56. Gears looked pretty good considering how bad the fluid looked. I'm not sure it's been changed, even by Dodge. I took pictures of it, too, in case of failure. There were some extensive shavings on the drain plug, but no visible damage to any of the gears or bearings, except a few lines and pits in the front bearing and race. The only people who've ever touched this truck until me were Dodge, so there is it.
Oh, pilot bearing was there. The needles appeared loose, and the grease dried up, but it was intact. The throwout bearing was gone. Stacked up. I'm not sure how he drove it here. I couldn't have stood it. The DMF had red dust all over it, with lateral as well as rotational slack. I can move it several 16ths by hand laterally, and it will rotate around 1" back and forth. The pressure plate looked fine, as did the clutch disk. The fingers in the pressure plate were worn quite a bit. The replacement clutch has quite a few miles on it, but you can see most of the machine marks on the flywheel, so it doesn't appear to be abused. It drove well this afternoon after reassembly, with no vibrations, and only the slightly louder transmission noises you would expect to hear. Considering the rubber boot on top of the transmission, and the upper rubber boot in the cab on the shifter were torn pretty bad, I can't say it's very annoying. There was one screw in the entire interior lower section holding it all on the floor... .

Pretty sure I fixed the customer's complaint about heat not getting to the rear floorboard, too. Looks like most of it was going down instead of back.....
I drove it 40+ miles trying to diagnose DPF issues, now. Appears the DPF is ashed, not sure what I'll be doing now... . I acquired a recent contact who says he can clean/repair it much cheaper than Dodge... . We spoke briefly this afternoon right before he closed. I'll be taking it to him in the morn. Customer wants it fixed, but I'm tired of this project... . Should have been out of here last Tuesday, and now looks like I'll have it another week. :{