I've been seeing higher EGT's on my stock '06 with AT as well. The Autometer gauge port is pre-turbo. When I climb some pretty long hills unloaded at 60 mph, I can hit 1300+ without much trouble. Pulling my 10K lb. 5th wheel uphill, it'll stay over 1450, if I'm not careful. I'm not sure what "safe for short periods of time" means, but when the hill is 6 miles long and I'm only running 35 mph, and getting passed by gassers pulling heavier loads, I know something's wrong. My elevation here is around 6000 ft.
I had the local diesel shop check the temps on each exhaust port... the #5 is running about 80 deg. higher than the others. Unfortunately, there's no place around here to test it under load. It'll be going into the Dodge shop before I pull the 5th wheel again next Spring. I had heard that Bosch has changed the part numbers on the injectors already.