2001 and 2002 Dodge PCMs allow a locked to locked shift under light throttle from 3rd to 4th. I've seen a broken shaft on a stock motor from this.
Another big cause of broken shafts are large RPM drops into lockup from poor fluid coupling.
Personally, I've broken two input shafts because I wanted to put off buying the billet parts.
The first one broke at about 280 HP, but I was forcing my transmission to shift with the converter locked. Stock transmission with a VB.
The second one broke at about the 400 HP level for no apparent reason. No locked shifts, just cruising down the highway. (Complete DTT transmission)
Once you see a few broken input shafts you'll see the problem. Several of them have casting flaws or 'air pockets' in the material making them weaker. There's no way of telling if you have one with problems or not unless you do some ultrasonic testing on it or something similar. Using the factory parts is a gamble at best.
Luckily for me, both of mine broke close to home and I was able to repair it myself. If I had broken somewhere on a road trip and had to pay someone to repair it, wrecker fees, etc. , the cost would quickly run over the price of the billet shaft. I consider myself lucky.
-Chris