I've run a K&N in a stock box, in my '95 2500 for over 80,000 miles. My last oil analysis showed a silicon number of 3. They are a great benefit and are perfectly safe. I bed mine in a bead of grease around the lower box and also seal the lower box to the upper box with a bead of grease and then leave it alone for the next 50,000 miles!
I was at Moss Bros Dodge a while back and they were selling K&N filters for the Cummins. I've seen them for sale at other dealers parts counters also.