Shannon, it could be your truck was surging slightly before the injector install, and by installing them it amplified the problem to where it is more noticeable.
My '03 surges slightly, not enough to really notice but if you pay attention you can feel it. If I were to add injectors it would probably be more noticeable.
You might try a couple things, like unplugging and reconnecting some of your sensors such as the MAP & IAT, even the throttle one if you can reach it, or you might use some dielectric compound on the connectors. Might try disconnecting the batteries awhile then reconnecting them and going through the throttle pedal reprogram afterwards.
One of my beefs with electronically controlled engines is their oversensitivity to erroneous or noisy signals, which affects drivabity and smoothness.
Vaughn