The seal on a caliper runs against the surface of the piston so as you inspect/change the piston your improve the surface... so honing the caliper is something that's not done... however behind the seal (square o-ring) dirt can build up and that needs to be cleaned... including the area behind the seal... also remember that the seal is moving across a surface (piston) that will not rust... Also the dust boots on a caliper is a much better seal, than the covers on a wheel cylinder... and keeping out the dust is as important as keeping clean brake fluid in the system. .
If I have a caliper that I need to work on... I pull the pistons, remove the seal (square o-ring) (actually a quad-ring) and than wash with solvent and a brass brush... than a pass through a hot water washer to remove the solvent... SOLVENT ON THE PARTS DURING ASSEMBLY WILL DAMAGE THE SEALS
In a wheel cylinder... the cups run across the bore of the wheel cylinder. . so wheel cylinders must always be honed... if you compress the cups when replacing shoes, you push the cups across all the dirt that's in the wheel cylinder and it almost always will leak... if the brake fluid in the system hasn't been kept clean. . the moisture will rust the bottom of the bore and as the cup is pushed across the rust it will damage the sealing surface on the cup. .
Thus, wheel cylinders need more service of a higher level than disc calipers...
Brake fluid is hygroscopic, which means it will absorb water... of course the system has to be vented to function so water will work its way to the system... I personally will use a vacuum pump and flush/bleed the breaks usually every year or two... I try to do that when I do my winter checks... but the process has been defined to start with the longest line... right rear, and add fluid to the master cylinder and either pump the master cylinder or apply vacuum to the bleeder and allow it to run until the fluid is clear... on my dually that means about a full quart of brake fluid to do the complete job... it comes out, dirty yellow. . and of course is clear...
I don't save brake fluid... once I open a container I use it all or throw it away... year old fluid on the shelf will be yellow. . a sign that's it has absorbed water...
Sorry for being so long winded...