CFAR, thanks for posting that! I just now caught this thread.
Trey... the swap is pretty moderately invoved, but not as bad as you would think. You will have to swap steering columns, main wiring harness (runs along firewall), PCM, air-to-oil and water-to-oil transmission coolers, foot pedal and brackets. Once you drop the trannies... swap the flywheels, and move the starter spacer plate to the truck receiving the automatic.
You will also need to swap the cross member that supports the transmission.
Also, the auto transmission is about 5 inches shorter than the 6 speed, so a trip to the driveshaft shop will be in order
As far as the electronics, we did learn that if the other truck is the same year model, the PCM (on the firewall) and harness can be swapped and everything else works just fine! Only problem we had, is his is a 2001, mine is a 2001. 5. Only difference is his had rear-wheel anti-lock brakes, mine had 4-wheel anti-locks, so now both of us have BRAKE and ABS warning lights which is no big deal, just pop out the bulbs and you're all set
Note: THE PCM CANNOT BE REPROGRAMMED!!!
Feel free to PM me if you have any questions! I'm more than willing to help out in any way!