Ah Hah! Fixed without the dealers help, those turkeys.
Mine had the same problem, occasionally. Mine would start, but wouldn't run but 500 RPM and a bit rough, then the idle would jump up to 1000 RPM, then it would die.
It might do this a couple of times, then run great. Wouldn't do it for a week or two, or three, then out of the blue, it would do it again, maybe once maybe twice, then purrs like a kitten once again.
I blamed every thing, including filters and the EZ.
But I had a leaking fuel line, more of a messy nuisance than anything. I had the dealer replace it, but it still leaked, and occasionally though rarely, stumbled.
I checked the line that was leaking and supposedly fixed and it was leaking again. Dealer says he replaced the line, now I doubt it. I bought another line, replaced it myself, walla, no leakage, no weapage, and after 7000 miles I realized after reading this thread again, no stumbling.
I think, this is a theory, sometimes under the right conditions, the line, the one from the pump to the rail, would leak in air after shutdown, and it would run like crap the next time until the air was purged.
Then again, maybe not??