BIG D, the only time I noticed the shutter with the 3's (Bullydog), was when I had the box set above 6 (again, mine is the competition box) which would be beyond level 9 on the standard PM3 box. To be painfully honest, if I was to to do it all over, I would have the Edge Comp. box. It's a neater install, rather than running two boxes. The wiring loom for the TST is a pig and a major PIA to get through the firewall, especially if you have used alot of the space up with gauge wires and such ( you could always drill a new hole for the TST, though). I like the TST box enough that I probably won't swap it out now, but the EZ box and the large injectors is my pick for a great daily driver, while keeping the punishment to the VP44 to a minimum IMHO. If you decide on the TST, don't bother with the upgrade to the comp. version, it's way too radical for daily use.
edit, just reread your post... if your PM2 has the phone jack on the back, have them reprogam it to a PM3 remote and try it, as the box is already installed. You could always sell it later if you are not happy.
Scott W.