Well, I may have been too general in my use of terms regarding surface temp. I didnt mean to imply that surface wouldnt be a good indicator of what lies behind it. But just for the sake of discussion (and to keep you out of your wifes hair while your laid up!), like you stated - surface temps are also influenced by conditions on the outside, and discoloration is also greatly influenced by elements on the outside. Looking at mine, the "high heat" spot could also have been caused by water dripping down off of the cowling. Matt400 may have part of it also in that heat soaking (I'd imagine this would occur due to longer heat dissaption times after shutdown) may affect the outward appearance of the manifold. Why some areas of the manifold would take longer, I dunno...
I made my location conclusion based on a desire to know the average temp of the air entering the turbo, not just the hottest single contributor as it exits the port. BUT!!! It would sure as heck be easier to drill right off of that #3 port.....
Hey man - get well soon! (but keep the good info coming!)