When I put studs in mine, I did them one at a time in standard head torque sequence and torqued them to 122 ft-lbs.
Since I didn't have a bottoming tap I did what someone else suggested. I took the first stock bolt removed of each size and ground a groove down the side with a 3 inch cut-off wheel on a die grinder. Then, after a bolt of that size was removed I shot a quick blast of brake cleaner down the hole (put a rag over the hole or you could end up with a face full!), then screwed the grooved bolt down to knock junk loose, removed the bolt, then used a curved copper tube on an air gun from my compressor to blow out the hole (again, put a rag over it!). I did this 2 times in each hole, then dipped the end of the stud in oil and screwed it in the head - just until it stops. Don't tighten it. Then put the nut on with the moly lube and torque it to spec.
This took an afternoon, so plan accordingly.
-Jay