I didn't realize you had a manual transmission, didn't pick that up on your signature line, sorry. I have the same gears 3. 73 and the tires are the stock ones that came with it... still have the original tires too. Mine is a 4X4 also. Mine is not a 3500 though so maybe you are hauling around more net weight than I am??? Maybe THAT is the difference? I am running a 2500. I do not know the weight difference between the two. It will make a difference. I know that I run two 75# sand tubes in the rear during winter time running and it makes a difference for sure. An extra 150# you would not think so ... but it does!
I was always under the impression that a manual transmission would give you better mileage due to less slippage in the power line. Not being an engineer or anything close to it... It makes sense that this would be the case. I defer to more knowledgeable people in TDR to help. Maybe you have a different DPF setup? Some talk about 'urea' being used or something to that effect. I am not familiar.