I have a @006 f650 with the 5.9 cummins in it with Allison automatic. When I start the truck when cold it will start with no problem. As the truck warms up it starts to loose power. After driving 2 to 3 miles it will slow down to max speed of around 15 mph. If you lift your foot off the throttle it will die instantly. To get the truck to restart you have to let it sit for few minutes without any attempt to start. If you can keep it going the truck will start to run better the farther you go. If you make it 20 miles the truck will almost run as it should. If you leave it idling to get to the bad running part it sounds like it is running low of fuel because it is missing. It also does produce excessive black smoke. I have replaced the low pressure pump, cp3 pump, and the common rail with new sensors and relief valve. The truck has gotten progressively worse since I bought it 2 months ago and is about unusable now unless I leave it running around the clock. Any suggestions?? I did take my truck to shop in the next town for troubleshooting. They are the ones that told me to replace cp3 pump. Truck had code for low supply pressure and low rail metering pressure.
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