Usually an overcharged battery will have the telltale "bloat". But since the batteries are hardwired together, and it's always the same one, I'd be looking for mechanical obstructions, like a screw poking through it, etc. . Perhaps they're over-tightening the battery hold-down? Does it always leak in the same place? Does the guy who installs the batteries always use his favorite sledge hammer to get the terminals on good?
There is a temp sensor for the batteries, but the voltage is good and only the one battery fails consistently. Unless that sensor is somehow digging through the case, my guess is that it's probably not that.
If you have one weak battery, it will drain the good one, but it won't make it leak. You can check for this imbalance by disconnecting both + terminals, and connecting a test lamp across them. If you can see it glow, that's definitely a problem. If not, measure the voltage across the test lamp. If it zero, that's good. if it is over 100 mV (0. 1 volts) that's looking bad. If your meter has 10 amp current measuring capability, you can measure the current between the two positive terminals. If it's more than, say 10 mA (0. 01 amp) you may have one draining the other. if the meter is reading positive current, the battery with the black probe connected to it is the bad one. If the meter reads negative current, the one with the red probe is bad. In any case, current flowing between two otherwise disconnected batteries (except ground) is not good.
BTW, the charging is controlled by the PCM, which regulates the voltage by varying the current through the rotor in the alternator.
Hope this helps!