After some heartaches with the lack of correct shims, and then a few problems setting up the preload, I believe I have prevailed. The truck backed out of the garage under its own power, and after I remembered to reinstall the clamp for the exhaust on the turbo, there is no noise coming from the drivetrain. Shifts seem to be the same. I put about 100 miles on it tonight just an empty pickup. Tomorrow I'll hook the truck to the tailer, load up the pulling truck and run down to Donnellson for the pulls.
Notes for those getting ready to take apart the Getrag. Try and find a supplier for shims. I did not have enough correct shims in the transmission to shim it up the way I wanted. I had to find some that would work. They will probably be fine, but the fit was just so-so.

I have both the small and large shims, I guess I'll have to figure out how to get some shim packs made up, for future projects.
I first installed the new bearings on the top shaft; input, pocket, and output. I installed the shafts and set the preload to about . 005". Then I pulled the top shaft out, and heartache #1 reared it head... ... As I was removing it the springs, balls, and 'dogs' for the front syncro popped out. It was a chore to put them back in, after some grease, some grief, and a walk around the yard, they went back in.
The next night I worked on the countershaft. Installed the gears, drove in the shaft and installed the bearings. When I was at the point I had the preload set right, the gears would spin on the shaft, instead of the shaft spinning on the bearings. I called and talked with James, and he felt I did not have the bearings quite drove fully down on the shaft ends. So I went back out and carefully tapped on the bearings, and sure enough they tapped down a little and then the shaft spun on the bearings like it should. I decided to tap the bearings some more to make sure they were fully bottomed. The one new bearing inner race chipped when I hit it, effectively ruining the new bearing.

None could be had the next day. So the next night I looked at the old countershaft bearings and they were ok, so I reinstalled them, the old cups, and set the shaft preload to . 001" or so, just so there was no endplay.
Last night RPA came over and I looked at his broken diff parts, and he and his friend Ryan helped me hang the 205 on the getrag, and stab the tyranny. It went right in, and they stayed and helped until the crossmember was in and everything was bolted down. Much thanks guys.
This morning I finished the installation and drove it. Then I drove it to Raps shop and put the detroit locker in his dana 80, and drove home with no noise, no leaks, and so far no heartaches. I'll run it a while and drain the oil for an inspection. I also think Iamb going to get an oil temp gauge and some fast coolers for a little relief. Also maybe work out some easy way of checking the oil level and filling it. Pulling the shifter is getting to be a pain.
Thanks to all that have helped and volunteered help. This brotherhood called the TDR is amazing. James you were a big help in all this, thank you for your time, your experience, and your willingness to help. I hope I didn't bother you too much.
I will try and bring the bad bearing to SOP for anybody that is interested in seeing it.
Michael