I had the same setup before I switched to Autometer. I used to get false readings sometimes too. Apparently, some air got into the fluid lines. My guess would be to bleed any air out of the system and see if that helps.
If it's not the gauge...
If you actually open up the fuel filter, can you see/hear fuel being pumped into the filter assembly when the lift pump is on? Check your codes and post them if that can be done conveniently. Have you noticed any performance problems or just noticed the problem because of the gauge?