My truck is an 02 and I can see the wires and wire connector that you are talking about. The two wires disappear under the passenger side battery tray on my truck. I cannot tell where they go from there. On both of our trucks it looks like one of the wires is white with a blue tracer.
I did look at the wiring diagram, but I could not find that connector or wire color, but I did rule out the horn, right turn / park light, AC compressor clutch, field wires to alternator, AC high pressure switch, AC low pressure switch, and fog lights.
Sorry I could not be of more help.
- John