Smoke altitude spooling
I am running the #5, a four inch exhaust, and AFE/custom intake. #5 is in stock position, star wheel left stock, injectors stock, pump stock except for plate. I can pull 32# of boost, smoke is minimal at lower altitudes, secret is to ease into throttle until boost is obtained. At higher altitudes it smokes a little worse. Full throttle, under load, full boost, a light haze is all that is produced. If you have turned your AFC back, and moved your plate, I would bet on those injectors being the culprit in the smoke dept.
My mileage actually got better after the mods I made, went from a solid 21 empty, to a 22-23. Loaded, much better, pulling 7000# in the mountains around 12-18, all depends on what side of the mountain I am on (uphill or downhill:-laf). . I leave my truck parked unless I have something heavy to pull, the Bug gets my vote with fuel prices at 4. 89!