Timing and the pumps fuel output. 94-95 autos (not sure on manuals) came stock at 12* timing I believe @ 160hp (auto) and 175hp (man. ). 96+ Trucks came stock at 14-14. 5* timing and 180hp (autos and Cali. engines) and 215hp (man. ). Delivery vavles and injectors are also different b/w the engines.
Nathan