Well, I have been doing ALOT more research on using an HE351ve from a 6. 7L CTD take off and using a Fleece controller to work the vanes.
The easeist way to install the turbo is by also using a 6. 7L exhaust manifold AND a 3rd gen downpipe.
The rest of the work involves plumbing oil and water cooling lines to the turbo, as well as wiring the controller.
All that being said, I am seriously considering using a 2nd gen exhaust manifold becuase I LIKE the way they seem to be more balanced in exhaust flow, though I have NOT made a final decision on which exhaust manifold to use yet.
In short answer to your question, the programming is done using laptop software from Fleece that lets you adjust different parameters of the turbo, INCLUDING maximum braking power, spool and top end. In essence, you get to customize the flow map of the turbo for your truck within the parameters of the HE351ve and your fueling upgrades. I have NOT used or seen the software yet, but I do know that if you are having ANY problems with the software, controller or tuning of the turbo, I would call Fleece Performance directly... they have a very good customer service reputation and they want to see your turbo upgrade run right!!
If you already have this turbo and controller installed on your truck, PLEASE let us know how you did it (with pix?? Oo. Oo. ) and how you like it.
While it seems very few people here on TDR have done this mod (although I think that CKelley did it), there are many people doing this conversion on Cummins Forum and Diesel Bombers snd other sites. These are a few of the best links I have found, though they are centered around using a 2nd gen manifold and there are others that use the simpler 6. 7L manifold to mount the turbo.
Here are the links--
He351ve setup - Dodge Cummins Diesel Forum
Installed he351ve using 2nd gen manifold - Dodge Cummins Diesel Forum
Got the HE351VE on - Dodge Diesel - Diesel Truck Resource Forums
Hope this helps!!