Diesel Dynamics likes Doug's Air Bulldog hood and it works well. The stock air filter has good cfm--the older Fleetguard model flowed 550 cfm but they didn't have the flow spec on their new one with the foam prefilter--it should be similar. The stock airbox, apparently the bottom, is the culprit. Even an empty airbox hurts hp when over 500. Doug makes a custom box bottom so that should help a lot.
To answer the other question, I am working on a cowl induction setup, but the BHAF has two problems--low cfm and too big a diameter to put a sealed box around it. I am working with a Fleetguard filter that is about 8x24" and flows over 800 cfm. The box is 10x24", ducts to a box on the underside of the hood that is open at the cowl. The outlet uses mandrel bent 4" tubing to the turbo. I expect to write it up for the TDR magazine, probably the May issue. you should be able to see it at May Madness. I just wanted to try something different, and am spending all my money on other stuff under the hood so couldn't afford Doug's hood.