If you look at my signiture you will see my 99 is almost the same as what you have. I have dynoed with and without the injectors and you don't need to turn off the Comp. With out the injectors it ran 304 hp on a dynojet with the comp on 5/5. That was at May Madness last year so the shop there knows how to dyno the diesels. In Feb I dynoed again this time on a Mustang with the injectors and did 361 hp and 812 ft lbs at 1800 rpm with the comp on 5/5. At the track I can easily push 1500 on the EGTs but it doesn't hurt is for the 1/4 mile and I have never even come close to 50 psi of boost. Usually only around 30 to 32 WOT. And that is with a restricted waste gate.
Make sure you have gauges, plan for a torque converter and have a blast. You will love them.