(1) You've got air in the lines. If you bled them, do it again. If the fluid isn't clear, keep bleeding each corner until it is; this is a good time to change the brake fluid. If the pedal is still spongy then, drive it a while and bleed again; there may be air lodged in a corner somewhere.
(2) You mis-installed the rear brakes.
(3) You've lost vacuum boost; but this should result in a very hard pedal, so is not likely to be the problem.