I have one of each. A 2006 auto, and a 2006 G56. If you are happy with small hp increases (Smarty level 3), I think the auto would be fine. Both trucks have over 100K, and both tow over 20K combined weekly around 400 miles. The G56 truck has been modified to the point that I had to get an SBC DD. This clutch is indestructible, but I HATE THIS CLUTCH. It works as advertised, but there is no slippage whatsoever. NONE. ZILCH! Nada. My wife cannot drive it. My daughter won't drive it. Starting a heavy load (one trailer weighs 23K) is very difficult. (Please don't lecture me about how to drive).
At about 90K, the auto started hunting for 3-4. I had a shop in town service it and tighten the bands. The transmission is better than it was when new! I love driving this truck now. Only cost me about 110 bucks.
So, my opinion is that if you are not going to add much power, go with the auto. If you're a hp junkie, then get the G56, and pay the price. You'll lose driveability, but it will be the last clutch you buy.